Extra Cheesy Three Cheese Eggplant Caponata Pasta Bake

By Jenna
September 5, 2025

Three Cheese Eggplant Caponata Pasta Bake

A twist on the classic Caponata di Melanzane, this pasta bake is full of savory, tangy and sweet flavors and topped with a trio of cheeses then baked to gooey, golden perfection.
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Prep Time 25 minutes
Cook Time 45 minutes
Total Time 1 hour 10 minutes
Servings 8 servings

Equipment

Ingredients
 
 

Eggplant Caponata

  • 1 large red bell pepper, halved (see Note 1)
  • 1 large eggplant, diced
  • 1 ¼ tsp salt, or more to taste
  • 1 tsp freshly cracked black pepper, divided
  • 3 tbsp olive oil, divided
  • ½ of a medium red onion, diced (about â…” cup)
  • 2 ribs celery, diced (about â…” cup)
  • 1 tsp chili flakes optional
  • 4-5 cloves garlic, minced
  • 4 cups fresh tomatoes, diced (see Note 2)
  • 1 Parmesan rind, optional (see Note 3)
  • 1 cup Castelvetrano olives, chopped (or other green olives of choice)
  • 1 tbsp capers
  • 1 tbsp honey
  • 3 tbsp red wine vinegar
  • 3 tbsp fresh parsley, finely chopped and divided

Pasta Bake

  • 1 lb dry pasta of choice (I used rigatoni but any short noodles work)
  • ½ cup pasta water
  • 1 ½ cups mozzarella cheese, shredded
  • 1 ½ cups provolone cheese, shredded
  • â…“ cup Parmesan cheese, shredded

Instructions
 

  • Add the eggplant pieces to a mixing bowl and season with 1 tsp salt, tossing to ensure all pieces are well coated
  • Set aside for 20 minutes (this helps to draw out moisture and remove bitterness)
  • Preheat oven to 400°F and line a large baking sheet with parchment paper
  • Drain and rinse eggplant well to remove excess salt then pat very dry with paper towels or a clean tea towel
  • Transfer to the prepared baking sheet and season with ½ tsp black pepper; add the red pepper and press flat then toss everything with 1 tbsp olive oil
  • Roast for 30 minutes or until lightly charred then remove the eggplant from the baking sheet and return the red pepper to the oven; broil for 1 minute or until the skin is charred and blistered then set the oven back to 400℉ (see Note 1)
  • While the eggplant and pepper are roasting, bring a large pot of salted water to a boil and cook pasta until al dente; set aside, reserving ½ cup pasta water
  • Once the red pepper has cooled, peel and remove the skin and dice
  • Heat a large pot over medium-low heat and add the remaining 2 tbsp of olive oil (you can even wipe and reuse the pot you cooked the pasta in to save dishes)
  • Add the onion and celery and sauté for 3-4 minutes, then add the chili flakes and garlic and sauté for 30 seconds or until fragrant
  • Add the tomatoes, Parmesan rind and olives and simmer for 10-15 minutes or until tomatoes have started to break down and the consistency is saucy (see Note 2)
  • Stir in the roasted eggplant and roasted red pepper along with the capers, honey, red wine vinegar, the remaining ½ tsp black pepper and salt to taste
  • Remove the Parmesan rind and discard, then stir in the cooked pasta, pasta water and 2 tbsp fresh parsley, then transfer to a large broiler safe baking dish
  • Top with the cheeses and bake for 7-8 minutes or until melted, then broil for 1-2 minutes until bubbly and golden
  • Top with the remaining tbsp of parsley and serve

Notes

Note 1: I make a roasted red pepper for this recipe at the same time as I roast the eggplant because it’s super simple and I already have the oven on. If you prefer, you can just used jarred roasted red peppers.
Note 2: I prefer ripe fresh tomatoes here, but you can definitely substitute for canned diced tomatoes; just make sure to drain them or the caponata will be saucier.
Note 3: I only use freshly grated cheeses, so I cut off the rind from my Parmesan and throw it in. I also keep extra rinds in my freezer (which I highly recommend doing because they add great flavor to soups and sauces). If you don’t have a Parmesan rind on hand, you can skip it.
Nutrition Facts are calculated automatically and may be inaccurate.

Nutrition

Serving: 1 servingCalories: 509kcalCarbohydrates: 56gProtein: 23gFat: 22gSaturated Fat: 9gPolyunsaturated Fat: 2gMonounsaturated Fat: 10gCholesterol: 39mgSodium: 1099mgPotassium: 605mgFiber: 6gSugar: 9gVitamin A: 1909IUVitamin C: 35mgCalcium: 412mgIron: 2mg
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